Tracking our past with DNA

Tracking our past with DNA

Louis and Mary Leakey at Olduvai Gorge • Smithsonian Institution (CC0)

Originally published 6 April 1992

There was a time, back in the ear­ly 1960s, when I was tempt­ed to aban­don physics for pale­oan­thro­pol­o­gy — the study of ear­ly humans.

A flood of excit­ing fos­sil dis­cov­er­ies — in North Africa, Chi­na, and Europe — were adding new details to the sto­ry of human evo­lu­tion, and pro­vid­ing our species with an ever more ancient pedi­gree. Most inspir­ing of all was the work of Louis and Mary Leakey in the Oldu­vai Gorge of East Africa, chron­i­cled in a series of arti­cles in Nation­al Geo­graph­ic.

The Leakeys had found fos­sils of the ear­li­est known human ances­tor, a child who lived near­ly 2 mil­lion years ago. Oth­er extra­or­di­nary dis­cov­er­ies fol­lowed. A fin­ger bone, a frag­ment of jaw, a flake of stone — these were the sub­tle clues that revealed our past.

And, of course, there was the romance of those pho­tographs in Nation­al Geo­graph­ic: Louis or Mary kneel­ing in the dusty gorge, care­ful­ly remov­ing a sliv­er of bone from a matrix of rock with camel’s-hair brush and den­tal pick; sup­per by lantern light in a tent fur­nished with col­lapsi­ble camp chairs and table; extract­ing the Land Rover from a rainy-sea­son wal­low, watched over by a chee­tah loung­ing the the branch­es of a near­by tree.

The romance lives on

The ques­tion of human ori­gins seemed far more inter­est­ing than the opti­cal prop­er­ties of molyb­de­num films—or what­ev­er it was I was work­ing on at the time. The temp­ta­tion to quit physics soon passed, but not the romance of pale­oan­thro­pol­o­gy. Through­out the 70s and 80s the dra­ma con­tin­ued, with more ancient skele­tal frag­ments unearthed in places with mag­i­cal names — Ngan­dong in Java, Dali in Chi­na, Omo in Ethiopia. Over it all — the slow­ly accu­mu­lat­ing evi­dence, the furi­ous con­tro­ver­sies of inter­pre­ta­tion — hung an aura of dust, camp smoke, the scents of exot­ic blos­soms, and smell of trop­ic rain.

Now comes a whol­ly new way to tell the sto­ry of human ori­gins. No dig­ging in far­away bone quar­ries. No kit and gear from Aber­crom­bie and Fitch. The new gurus of human evo­lu­tion wear white lab coats and nev­er come out of their air-con­di­tioned, stain­less-steel and glass lab­o­ra­to­ries in places like Berke­ley, Oxford, and New Haven.

They dig in human genes.

In every cell of our bod­ies we car­ry genes inher­it­ed from our ances­tors, a fam­i­ly tree writ­ten in DNA. Bio­chemists read the DNA, and, with the help of com­put­ers, try to fig­ure out our fam­i­ly tree. One of their find­ings sparked a live­ly controversy.

This was the so-called mito­chon­dr­i­al Eve.

Mito­chon­dria are com­part­ments in cells that “burn” food to pro­duce ener­gy. They con­tain a par­cel of DNA encod­ing 37 genes. This com­pares to the approx­i­mate­ly 100,000 genes that reside in the cel­l’s nucle­us. Unlike nuclear DNA, mito­chon­dr­i­al DNA is passed down exclu­sive­ly through the female lineage.

Tran­scrip­tions of mito­chon­dr­i­al DNA are now avail­able — list­ings of all the chem­i­cal units along the DNA strand. In 1987, geneti­cists led by Allan Wil­son of the Uni­ver­si­ty of Cal­i­for­nia at Berke­ley com­pared mito­chon­dr­i­al DNA of humans from all over the world. A com­put­er pro­gram ana­lyzed the dif­fer­ences and inferred a fam­i­ly tree of relationships.

The aston­ish­ing con­clu­sion: All humans present­ly on earth are relat­ed through the female lin­eage to a com­mon ances­tor, a woman who lived in Africa approx­i­mate­ly 200,000 years ago, dubbed mito­chon­dr­i­al Eve.

The bone-dig­gers balked at this con­clu­sion. They know from the fos­sil record that Africa, Europe, and Asia have been pop­u­lat­ed by ear­ly humans for more than a mil­lion years. If descen­dants of mito­chon­dr­i­al Eve moved out of Africa some­time less than 200,000 years ago they must have com­plete­ly replaced all pre­vi­ous lin­eages of humans, with­out any detectable interbreeding.

This extra­or­di­nary replace­ment would sure­ly stand as one of the epic events of human his­to­ry, and, accord­ing to the bone-dig­gers, is exceed­ing­ly unlikely.

The bones, they say, sug­gest that mod­ern humans evolved in many dif­fer­ent regions con­tem­po­ra­ne­ous­ly, over a peri­od of mil­lions of years. Any com­mon female ances­tor must have lived 2 mil­lion years ago, not 200,000. They see no fos­sil evi­dence for a sud­den replace­ment of ancient pop­u­la­tions by descen­dants of a rel­a­tive­ly recent Eve.

In recent weeks, the evi­dence for mito­chon­dr­i­al Eve has been chal­lenged again, this time by geneti­cists. Alan Tem­ple­ton of Wash­ing­ton Uni­ver­si­ty, and oth­ers, have shown that cur­rent meth­ods of infer­ring genet­ic rela­tion­ships from DNA by com­put­er are seri­ous­ly, per­haps fatal­ly, flawed. The present data the com­put­er pro­grams give incon­clu­sive results.

Last word not in yet

For the time being, the bone-dig­gers seem to have car­ried the day. But we have not heard the last from geneti­cists. As more com­plete genet­ic data becomes avail­able, includ­ing nuclear DNA from humans and oth­er pri­mates, it will be sub­ject­ed to ever more sophis­ti­cat­ed com­put­er analy­sis. Eve might be res­ur­rect­ed yet.

For us clos­et pale­oan­thro­pol­o­gists the con­tro­ver­sy is won­der­ful­ly excit­ing. It pits dusty bone-dig­gers against white-coat­ed bio­chemists, and the romance of field work in exot­ic places against the inge­nious tech­niques of mol­e­c­u­lar biol­o­gy. At stake is the true sto­ry of human evolution.


The the­o­ry of a “Mito­chon­dr­i­al Eve” from approx­i­mate­ly 200,000 years ago con­tin­ues to be well sup­port­ed by DNA evi­dence, which has led to the Recent African Ori­gin Mod­el—the migra­tion from Africa of anatom­i­cal­ly mod­ern humans dis­plac­ing oth­er archa­ic human species — becom­ing more wide­ly accept­ed among pale­oan­thro­pol­o­gists. ‑Ed.

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