Prying open Darwin’s ‘Black Box’

Prying open Darwin’s ‘Black Box’

Photo by Shardar Tarikul Islam on Unsplash

Originally published 19 July 1999

Some weeks ago I described cer­tain South Amer­i­ca ants that tend fun­gal gar­dens in under­ground cham­bers. They leave the nest to cut bits of leaves from near­by veg­e­ta­tion. These they car­ry home, chew into a pulp, and use to manure their crop, a mush­room fun­gus. The fun­gus pro­duces “fruits” called gongy­lidia which the ants eat.

Like all gar­den­ers, the ants must watch for “weeds,” in the form of an unwant­ed fun­gus that intrudes upon the food crop. If not con­trolled, these inter­lop­ers can destroy a garden.

The ants use a pes­ti­cide to fight the “weeds.” Antibi­ot­ic bac­te­ria liv­ing on the bod­ies of the ants keep gar­den “weeds” in check. These bac­te­ria belong to the same genus—Strep­to­myces—from which are derived more than half of the antibi­otics used by humans.

Even such com­plex liv­ing sys­tems as that which embraces the ants, their crop fun­gus, the weed fun­gus, and the antibi­ot­ic bac­te­ria can be account­ed for by nat­ur­al selec­tion act­ing on ran­dom genet­ic mutations.

Or so I claimed.

A thought­ful read­er chal­lenged me. He referred to bio­chemist Michael Behe’s book, Dar­win’s Black Box, that makes the counter-argu­ment that cer­tain bio­log­i­cal sys­tems are “irre­ducibly com­plex” — that is, there is no con­ceiv­able sequence of muta­tions that could lead to the final sys­tem by nat­ur­al selec­tion, because no sin­gle muta­tion con­fers an “advan­tage.” The sys­tem only “works” if all the parts are present: in this case, pre­sum­ably, ants, crop fun­gus, weed fun­gus, and antibiotic.

Accord­ing to Behe, Dar­win­ian expla­na­tions of irre­ducibly com­plex sys­tems are a “black box.” We are asked to sim­ply assume that what is inside the box — some hypo­thet­i­cal sequence of ran­dom muta­tions act­ed on by nat­ur­al selec­tion — will explain the world.

In place of Dar­win­ian expla­na­tions Behe offers some­thing called “intel­li­gent design,” which is a fan­cy new term for “God.” But, of course, Behe’s “intel­li­gent design” is a black box of anoth­er sort.

Behe’s argu­ment has been rebutted in many places: for instance, by biol­o­gist Richard Dawkins in his book Climb­ing Mount Improb­a­ble. How­ev­er, as my cor­re­spon­dent sug­gests, no evo­lu­tion­ist has yet spec­i­fied the sequence of events that led to the com­plex sys­tem of ants, fun­gus, “weeds,” and pesticide.

Is the sys­tem “irre­ducibly com­plex?” Time will yield the answer.

The dif­fer­ence between Dar­win’s black box and Behe’s black box is that Dar­win’s box can con­ceiv­ably be pried open. And that of course is what sci­ence is all about. If we just say up front “God did it, any old way he pleased,” then we will nev­er under­stand how the world hangs togeth­er or what makes it tick. The causal laws of nature may or may not be the work of a per­son­al god, depend­ing upon your the­o­log­i­cal per­sua­sion, but by dis­cov­er­ing them we free our­selves from the whims of divine capriciousness.

How might Dar­win’s black box be pried open?

By con­fi­dent­ly search­ing for an ever more com­plete fos­sil record, as opposed to sim­ply assum­ing that “gaps” are the province of spe­cial creation.

By turn­ing evo­lu­tion into an exper­i­men­tal sci­ence. For exam­ple, evo­lu­tion­ary biol­o­gist Richard Lens­ki of Michi­gan State Uni­ver­si­ty has been watch­ing bac­te­ria evolve in the lab­o­ra­to­ry since 1988, not so long ago on a human timescale, but 24,000 gen­er­a­tions ago for a microbe. A new gen­er­a­tion on bac­te­ria is born every 3 or 4 hours, mutat­ing and adapt­ing to new exper­i­men­tal con­di­tions under the watch­ful eyes of Lens­ki and his students.

By run­ning high-speed com­put­er sim­u­la­tions of muta­tion and selec­tion. For exam­ple, Swedish biol­o­gists Dan Nils­son and Susanne Pel­ger have per­formed an ele­gant com­put­er sim­u­la­tion of the evo­lu­tion of an eye, an organ which spe­cial cre­ation­ists have always assumed is “irre­ducibly com­plex.” They start­ed with a flat light-sen­si­tive patch of skin, and in a few hun­dred thou­sand gen­er­a­tions of ran­dom muta­tion and selec­tion end­ed up with a good “fish eye” with a lens.

By learn­ing more about the genet­ic code and how genet­ic muta­tions man­i­fest them­selves in an organ­ism. Some­time with­in the next year or so sci­en­tists will have achieved a com­plete chem­i­cal tran­scrip­tion of human DNA. The genet­ic codes of many sim­pler organ­isms have already been transcribed.

And so on.

We should not be intim­i­dat­ed by Dar­win’s “black box.” It is one of the most trans­par­ent box­es ever devised by the human mind, cer­tain­ly more trans­par­ent than the ever-inscrutable mind of God.

And in spite of what you will hear from reli­gious­ly-moti­vat­ed crit­ics, organ­ic evo­lu­tion is one of the firmest facts ever estab­lished by science.

Dis­cov­er­ing a plau­si­ble Dar­win­ian mech­a­nism for how leaf­cut­ter ants evolved their com­plex syn­er­gy with crop fun­gus and pes­ti­cide bac­te­ria pos­es no threat to the human spir­it. Rather, as Har­vard biol­o­gist Stephen Jay Gould writes in a recent issue of Sci­ence: “Evo­lu­tion is true — and the truth can only make us free.”

But an evo­lu­tion­ary descrip­tion of the world cer­tain­ly does not exhaust our quest for mean­ing. Gould con­tin­ues: “When we stop demand­ing more than [fac­tu­al] nature can log­i­cal­ly provide…we lib­er­ate our­selves to look with­in. Sci­ence can then forge true part­ner­ships with phi­los­o­phy, reli­gion, and the arts and human­i­ties, for each must sup­ply a patch in that ulti­mate coat of many col­ors, the gar­ment called wisdom.”

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