No more free lunch at this table

No more free lunch at this table

Typical gut bacteria grown in a petri dish • Image by Nicola Fawcett and Christopher Wood (CC BY-SA 4.0)

Originally published 27 June 1994

You may want to stop read­ing now.

I want to talk about microbes. And to start with, I want to talk about the microbes that inhab­it the human body.

They are every­where: eyes, ears, teeth, gums, between the toes, in the groins. We are their plan­et. They har­bor by the mil­lions in the grass­lands of the skin, the forests of the scalp, the rain forests of the armpits.

Most dense­ly of all, they thrive in the cav­erns of the diges­tive tract. In the low­er part of the large intes­tine there are com­mon­ly 100 bil­lion bac­te­ria per gram of excre­ment (a gram is about half the mass of a dime). A sub­stan­tial part of our body weight is the bugs who live on us and with­in us.

They are the cause of body odor, bad breath, and intesti­nal gas. When their pop­u­la­tions get wild­ly out of con­trol they cause mal­adies such as yeast infec­tions and thrush. But most­ly they are harm­less. Biol­o­gists call them com­men­sal, which means in its Latin root, “eat­ing at the same table.”

Indeed, they are bet­ter than harm­less; they are pos­i­tive­ly ben­e­fi­cial. Our res­i­dent microbes man­u­fac­ture vit­a­mins, stim­u­late the immune sys­tem, and fill body nich­es that might oth­er­wise be invad­ed by dis­ease-caus­ing organ­isms. We could not remain healthy with­out them.

In oth­er words, we would be in a fix with­out our invis­i­ble bugs.

Long before any­one knew that microbes exist, humans made use of their tal­ents. They help us make and pre­serve cheese, yogurt, bread, beer, and wine. They pre­pare flax plants for the mak­ing of linen. From Day One, microbes have been an unrec­og­nized cor­ner­stone of human econ­o­my. Try to imag­ine civ­i­liza­tion with­out wine and cheese on a linen cloth.

And more. Much more. We now real­ize that the oxy­gen we breathe was put into the air by microbes. All plants, includ­ing the food we eat, need nitro­gen; but no plant can take nitro­gen direct­ly from the air. Plants depend upon microbes in the soil to “fix” atmos­pher­ic nitro­gen into a usable form.

The tim­ber with which we build our hous­es could not grow with­out the fer­til­iz­ing effects of microbes in the soil. Our fos­sil fuels — oil, gas, and coal — would not exist with­out microbes. Com­mer­cial deposits of iron, and per­haps even gold, owe their exis­tence to the activ­i­ties of bacteria.

Our plan­et could get along very well, thank you, if humans sud­den­ly van­ished from its face. But with­out the vast, seething, invis­i­ble mass of microbes that inhab­it every inch of its sur­face, Earth would be as drea­ry as the sur­face of the moon.

Lynn Mar­gulis, a biol­o­gist at the Uni­ver­si­ty of Mass­a­chu­setts at Amherst, has made her­self the poet/historian of microbes, chron­i­cler of their unseen goings-on, prais­er of their hid­den beau­ty. With her son Dori­on Sagan, she has pub­lished sev­er­al books shar­ing with us her prodi­gious knowl­edge of the one-celled crea­tures. No race of vis­i­ble beasts on Earth has had a more ardent friend.

We have done well sep­a­rat­ing our­selves from and exploit­ing oth­er organ­isms,” write Mar­gulis and Sagan, “but it seems unlike­ly that such a sit­u­a­tion can last… We must slow down, share, and reunite our­selves with oth­er beings if we are to achieve evo­lu­tion­ary longevity.”

By oth­er beings, they mean pri­mar­i­ly microbes.

The knowl­edge gar­nered by Mar­gulis and her micro­bi­ol­o­gy col­leagues is nec­es­sary if we are to pre­serve the plan­e­tary envi­ron­ment of which microbes are so fun­da­men­tal­ly a part. How­ev­er, that same knowl­edge offers oppor­tu­ni­ties for fur­ther envi­ron­men­tal disruption.

Hav­ing dis­cov­ered the microbes, probed their lives, and under­stood how they eat, move about and repro­duce, humans are now ready to embark upon the great­est exploita­tion of all: to har­ness the chem­i­cal process­es of microbes on a scale that will dwarf the mak­ing of cheese, beer, and linen.

Microbes will be used to extract min­er­als from ores, pro­duce food­stuffs, man­u­fac­ture chem­i­cals, gen­er­ate elec­tric­i­ty, treat waste­water, clean up pol­lu­tants, and pro­tect crops from frost — for starters.

If a microbe can­not be found in nature that can per­form a spe­cif­ic task, then tech­nol­o­gists will genet­i­cal­ly engi­neer a bug that can.

Many bac­te­ria have already been genet­i­cal­ly mod­i­fied. Escherichia coli, the most com­mon micro­bial inhab­i­tant of the human gut, has been fid­dled with to make it effec­tive at a dozen indus­tri­al tasks, from break­ing down tox­ic chem­i­cals to the pro­duc­tion of dyes.

No more eat­ing at the same table with­out going to work.

In many cas­es, it will be nec­es­sary to release genet­i­cal­ly mod­i­fied microbes into the envi­ron­ment if they are to achieve the desired result. The eco­log­i­cal con­se­quences of release are not yet well under­stood. We may suc­ceed in clean­ing up some of the mess­es we have made; we may make big­ger messes.

We stand at an awe­some cross­roads in the his­to­ry of life. The indus­tri­al exploita­tion of microbes can be filled with promise, or fraught with danger.

It is unlike­ly that any­thing we do will have much effect on the sur­vival of the invis­i­ble organ­isms that had the plan­et to them­selves for most of Earth­’s his­to­ry. As Mar­gulis and Sagan sug­gest, it is our own sur­vival that is in jeopardy.

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